杨华芳, 张祖兵, 朱家颖, 柏天琦, 张宏瑞. 2024: 基于转录组的赤斑白条天牛嗅觉相关基因分析. 南方农业学报, 55(3): 699-709. DOI: 10.3969/j.issn.2095-1191.2024.03.011
引用本文: 杨华芳, 张祖兵, 朱家颖, 柏天琦, 张宏瑞. 2024: 基于转录组的赤斑白条天牛嗅觉相关基因分析. 南方农业学报, 55(3): 699-709. DOI: 10.3969/j.issn.2095-1191.2024.03.011
YANG Hua-fang, ZHANG Zu-bing, ZHU Jia-ying, BAI Tian-qi, ZHANG Hong-rui. 2024: Analysis of olfactory related genes in Batocera rufomaculata based on transcriptome. Journal of Southern Agriculture, 55(3): 699-709. DOI: 10.3969/j.issn.2095-1191.2024.03.011
Citation: YANG Hua-fang, ZHANG Zu-bing, ZHU Jia-ying, BAI Tian-qi, ZHANG Hong-rui. 2024: Analysis of olfactory related genes in Batocera rufomaculata based on transcriptome. Journal of Southern Agriculture, 55(3): 699-709. DOI: 10.3969/j.issn.2095-1191.2024.03.011

基于转录组的赤斑白条天牛嗅觉相关基因分析

Analysis of olfactory related genes in Batocera rufomaculata based on transcriptome

  • 摘要: 【目的】鉴定赤斑白条天牛(Batocera rufomaculata)嗅觉相关基因,筛选其中的差异表达基因(DEGs),为探明赤斑白条天牛嗅觉机制和基于嗅觉识别的天牛生物防治新途径研究提供理论支撑。【方法】采用Illumina NovaSeq6000测序平台对赤斑白条天牛触角、跗节和残体进行转录组测序,利用测序数据组装、注释、数据库序列检索、序列比对及差异基因分析等生物信息学分析方法挖掘嗅觉相关基因。【结果】转录组测序共获得137405条Unigenes,平均长度774 bp,N50为1462 bp,GC含量42.93%。通过同源比对共鉴定出289个嗅觉基因,包括45个OBPs、22个CSPs、50个ORs、20个IRs、26个GRs、7个SNMPs、8个CXEs、82个CYPs、19个AOXs和10个GSTs基因。通过比较所有样本的转录组,共筛选到8861个DEGs,其中2713个上调表达、6148个下调表达。基因功能注释和信号通路富集分析结果表明,有3613个DEGs注释到GO功能的生物学过程、细胞组分和分子功能,其中以生物学过程的占比最高,为34.87%;有4002个DEGs注释到KEGG数据库,参与96条通路。进一步对嗅觉基因进行分析发现,有114个嗅觉基因表达差异显著,其中79个上调表达、35个下调表达;OBP22、OBP29、CSP10、CSP15、SNMP1、OR41、CXE2CYP10基因在触角中的表达量均高于其他组织,CSP10CSP15基因在雌虫中偏好表达,CYP34基因在雄性中偏好表达,且在跗节中高表达。【结论】筛选到赤斑白条天牛OBPs、CSPs、ORs、IRs、GRs、SNMPs、CXEs、CYPs、AOXs和GSTs等嗅觉相关基因。推测触角中高表达的OBPs和CSPs基因对赤斑白条天牛雌雄虫识别同类异性释放的信息素或寄主植物释放的挥发物起关键作用,在雌虫中偏好表达的CSPs基因可能在雌虫寻找产卵场所过程中发挥重要作用。

     

    Abstract: 【Objective】The olfactory related genes in Batocera rufomaculata were identified and the differentially expressed genes (DEGs) were screened to provide theoretical support for the exploration of olfactory mechanism and new approaches to biological control of B. rufomaculata based on olfactory recognition. 【Method】The transcriptome sequences of antennae, tarsus and the body without antennae and tarsus of B. rufomaculata were sequenced using Illumina NovaSeq 6000 sequencing. Bioinformatics analysis methods such as sequencing data assembly, annotation, database sequence retrieval, sequence alignment and differential gene analysis were used to mine olfactory related genes. 【Result】In total, 137405 unigenes were obtained by transcriptome sequencing with an average length of 774 bp, N50 of 1462 bp,and GC content of 42.93%. Through homologous alignment, a total of 289 olfactory related genes were identified, including 45 OBPs, 22 CSPs, 50 ORs, 20 IRs, 26 GRs, 7 SNMPs, 8 CXEs, 82 CYPs, 19 AOXs, 10 GSTs genes. By comparing the transcriptome of all samples,a total of 8861 DEGs were screened,of which 2713 were up-regulated and 6148 were down-regulated. The results of gene function annotation and pathway enrichment analysis showed that 3613 DEGs were annotated to the biological process, cellular component and molecular function of GO function, among which the biological process accounted for the highest proportion (34.87%). A total of 4002 DEGs were annotated to the KEGG database and involved in 96 pathways. Further analysis of olfactory related genes showed that 114 olfactory genes expression were significantly different, of which 79 were up-regulated and 35 were down-regulated. The expression levels of OBP22, OBP29, CSP10, CSP15, SNMP1,OR41, CXE2 and CYP10 genes in antennae were higher than those in other tissues. CSP10 and CSP15 genes were preferentially expressed in females. CYP34 gene was preferentially expressed in males and highly expressed in the tarsus. 【Conclusion】Olfactory related genes in B. rufomaculata such as OBPs, CSPs, ORs, IRs, GRs, SNMPs, CXEs, CYPs, AOXs, and GSTs are screened. It is speculated that the highly expressed OBPs and CSPs genes in the antennae play a crucial role in the recognition of pheromones released by the opposite sex of the same species or volatiles released by host plants. The CSPs gene that are preferentially expressed in females may play an important role in the process of females looking for oviposition sites.

     

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