石钰仕, 肖涛, 陈有波, 余欢, 赵德鹏, 龙霞, 谭启松, 李辉. 2024: 基于转录组学和蛋白组学的鸡蛋绿壳性状形成分子机制研究. 南方农业学报, 55(3): 638-649. DOI: 10.3969/j.issn.2095-1191.2024.03.005
引用本文: 石钰仕, 肖涛, 陈有波, 余欢, 赵德鹏, 龙霞, 谭启松, 李辉. 2024: 基于转录组学和蛋白组学的鸡蛋绿壳性状形成分子机制研究. 南方农业学报, 55(3): 638-649. DOI: 10.3969/j.issn.2095-1191.2024.03.005
SHI Yu-shi, XIAO Tao, CHEN You-bo, YU Huan, ZHAO De-peng, LONG Xia, TAN Qi-song, LI Hui. 2024: Molecular mechanism of egg green shell trait formation based on transcriptomic and proteomics. Journal of Southern Agriculture, 55(3): 638-649. DOI: 10.3969/j.issn.2095-1191.2024.03.005
Citation: SHI Yu-shi, XIAO Tao, CHEN You-bo, YU Huan, ZHAO De-peng, LONG Xia, TAN Qi-song, LI Hui. 2024: Molecular mechanism of egg green shell trait formation based on transcriptomic and proteomics. Journal of Southern Agriculture, 55(3): 638-649. DOI: 10.3969/j.issn.2095-1191.2024.03.005

基于转录组学和蛋白组学的鸡蛋绿壳性状形成分子机制研究

Molecular mechanism of egg green shell trait formation based on transcriptomic and proteomics

  • 摘要: 【目的】挖掘参与绿壳蛋形成的潜在调控基因和蛋白,为开展赤水乌骨鸡品种选育及揭示家禽蛋壳颜色形成分子机制提供理论依据。【方法】以280日龄的绿壳纯系赤水乌骨鸡为研究对象,分别采集产深绿(SL)和白壳(BK)鸡蛋的母鸡蛋壳腺组织样品,通过转录组测序和TMT定量蛋白组学技术分别筛选出差异表达基因(DEGs)和差异表达蛋白(DEPs),并对转录组学和蛋白组学进行联合分析,筛选出调控绿壳鸡蛋颜色深浅的候选基因和候选蛋白。【结果】经转录组测序,从SL组与BK组间共筛选出82个DEGs,其中46个DEGs呈上调表达、36个DEGs呈下调表达;有4个DEGs与蛋壳色素的合成及沉积相关,分别是SLC22A4、SPP1、FAM26EHSP5基因,且均为上调表达的DEGs;KEGG信号通路分析结果显示,DEGs显著富集的信号通路有α-亚麻酸代谢和花生四烯酸代谢等。通过TMT定量蛋白组学分析,共鉴定获得167个DEPs,其中104个DEPs呈上调表达、63个DEPs呈下调表达;KEGG信号通路富集分析发现,DEPs主要富集于甘油磷脂代谢、半胱氨酸和蛋氨酸代谢及醚脂质代谢等信号通路。转录组学和蛋白组学的联合分析结果表明,转录组与蛋白组无共同注释的GO功能条目,而82个DEGs和167个DEPs富集到19条KEGG信号通路上,其中甘油磷脂代谢和醚脂类代谢2条信号通路在转录组与蛋白组中均有出现。【结论】SLC22A4、SPP1、FAM26EHSP5基因及FAM102A、FAM107B和SLCO1B1蛋白可能参与蛋壳色素的合成、转运和沉积,尤其是SLC家族发挥着重要作用,故推测这些基因和蛋白是影响赤水乌骨鸡蛋绿壳形成的候选基因和候选蛋白,且富集到的甘油磷脂代谢和醚脂类代谢可能是调节鸡蛋绿壳形成的关键信号通路。

     

    Abstract: 【Objective】Study on potential regulatory genes and proteins involved in the formation of green shell eggs could provide a theoretical basis for the breeding of Chishui black-bone chicken and revealing the molecular mechanism of eggshell color formation in poultry. 【Method】Pure 280-day-old Chishui black-bone chicken was used as the research object. Collected gland tissue samples of dark green (SL) and white shell (BK) eggs, selected differential expressed genes (DEGs) and differentially expressed proteins (DEPs) through transcriptome sequencing and TMT quantitative proteomics technology, and combined analysis of the transcriptomics and proteomics were conducted, selected the candidate genes and candidate proteins regulating the color of green shell eggs. 【Result】A total of 82 DEGs were identified from the SL and BK groups through transcriptome sequencing, with 46 up-regulated and 36 down-regulated DEGs. Among these, four DEGs associated with eggshell pigment synthesis and deposition (SLC22A4, SPP1, FAM26E and HSP5 genes) were found to be up-regulated. KEGG signaling pathway analysis revealed significant enrichment of α-linolenic acid metabolism and arachidonic acid metabolism in the DEGs pathways. Additionally, a total of 167 DEPs were identified through TMT quantitative proteomics analysis, including 104 up-regulated and 63 down-regulated DEPs. KEGG signaling pathway enrichment analysis showed that the DEPs were mainly enriched in glycerophospholipid metabolism, cysteine and methionine metabolism, as well as ether lipid metabolism signaling pathways. Joint analysis of transcriptomics and proteomics indicated no common annotation of GO function terms between transcriptome and the proteome. However, 82 DEGs and 167 DEPs were enriched on 19 KEGG signaling pathways, among which two signaling pathways, glycerophospholipid metabolism and ether lipid metabolism, were found in both the transcriptome and proteome. 【Conclusion】 SLC22A4, SPP1, FAM26E and HSP5 genes and FAM102A, FAM107B and SLCO1B1 proteins may be involved in eggshell pigment synthesis, transport and deposition, especially the SLC family plays an important role, so it is speculated that these genes and proteins affect the formation of chicken egg candidate genes and proteins, and the enrichment of glycerophospholipid metabolism and ether lipid metabolism may be the key signaling pathway to regulate the formation of egg green shell.

     

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