刘志鑫, 孙宇, 叶子, 罗睿雄, 李忠, 蒲金基, 张贺. 2021: 芒果VOZ转录因子基因家族成员鉴定及生物信息学分析. 南方农业学报, 52(7): 1762-1770. DOI: 10.3969/j.issn.2095-1191.2021.07.004
引用本文: 刘志鑫, 孙宇, 叶子, 罗睿雄, 李忠, 蒲金基, 张贺. 2021: 芒果VOZ转录因子基因家族成员鉴定及生物信息学分析. 南方农业学报, 52(7): 1762-1770. DOI: 10.3969/j.issn.2095-1191.2021.07.004
LIU Zhi-xin, SUN Yu, YE Zi, LUO Rui-xiong, LI Zhong, PU Jin-ji, ZHANG He. 2021: Identification and bioinformatics analysis of VOZ transcription factor gene family members in Mangifera indica. Journal of Southern Agriculture, 52(7): 1762-1770. DOI: 10.3969/j.issn.2095-1191.2021.07.004
Citation: LIU Zhi-xin, SUN Yu, YE Zi, LUO Rui-xiong, LI Zhong, PU Jin-ji, ZHANG He. 2021: Identification and bioinformatics analysis of VOZ transcription factor gene family members in Mangifera indica. Journal of Southern Agriculture, 52(7): 1762-1770. DOI: 10.3969/j.issn.2095-1191.2021.07.004

芒果VOZ转录因子基因家族成员鉴定及生物信息学分析

Identification and bioinformatics analysis of VOZ transcription factor gene family members in Mangifera indica

  • 摘要: 【目的】对芒果维管束锌指蛋白(VOZ)基因家族成员进行鉴定并对其生物信息学进行分析,为深入探究芒果VOZ转录因子在免疫反应中的生物学功能提供理论参考。【方法】基于芒果全基因组数据,利用生物信息学方法鉴定芒果VOZ转录因子基因家族成员,并分析其理化性质、保守基序及系统发育进化。通过实时荧光定量PCR检测胶孢炭疽菌(Colletotrichum gloeosporioides)与细菌性黑斑病菌(Xanthomonas citri pv.mangiferaeindicae)侵染下的相对表达量。【结果】从芒果全基因组中间鉴定出4个VOZ转录因子家族成员,分别为MiVOZ1MiVOZ2MiVOZ3MiVOZ4基因,开放阅读框(ORF)长度为1290~1482 bp,编码氨基酸数量为429~493,蛋白分子量为47.26~54.96 kD,等电点(pI)为5.47~6.00,亲/疏水性指数为-0.663~-0.552,不稳定指数为37.66~50.86,二级结构均以无规则卷曲和α-螺旋为主要元件。芒果和其他9个物种的49个VOZ蛋白聚为十个分支,在ClassⅠ中3个MiVOZs蛋白(MiVOZ2、MiVOZ3和MiVOZ4)与苹果、木薯和毛果杨聚类在一起,在ClassⅤ中MiVOZ1与拟南芥、木薯和毛果杨聚类在一起。在胶孢炭疽菌侵染下,仅MiVOZ1MiVOZ2基因的相对表达量较对照显著升高(P<0.05,下同);在细菌性黑斑病菌侵染下,仅MiVOZ2基因的相对表达量较对照显著升高。【结论】芒果VOZ转录因子在抵御不同病原菌侵染的生物学功能方面存在差异,其中MiVOZ2基因在抵御胶孢炭疽病和细菌性黑斑病侵染的免疫反应中具有相似生物学功能,属于正调节因子。

     

    Abstract: 【Objective】 By identifying the members of the mango vascular plant one-zinc finger protein(VOZ) gene family members and conducting bioinformatics analysis on them, it laid a foundation for exploring the biological functions of mango VOZ transcription factors in immune response.【Method】 Based on mango genome-wide data, bioinformatics methods were used to identify members of the mango VOZ transcription factor gene family members, and to analyze their physical and chemical properties, conservative motifs, and phylogenetic evolution. Real-time fluorescent quantitative PCR was used to detect the relative expression levels of Colletotrichum gloeosporioides and Xanthomonas citri pv. mangiferaeindicae infection.【Result】 Four VOZ transcription factor family members were identified from the whole mango genome, namely MiVOZ1, MiVOZ2, MiVOZ3 and MiVOZ4 genes. The open reading frame(ORF) length was 1290-1482 bp, the number of encoded amino acids was 429-493, and the protein molecular weight was 47.26-54.96 kD, isoelectric point(pI) was 5.47-6.00, affinity/hydrophobicity index was -0.663 to -0.552, instability index was 37.66-50.86, secondary structure was mainly random coil and α-helix element. Mango and 49 VOZ proteins of 9 other species were clustered into ten major groups. In Class Ⅰ, three MiVOZs proteins(MiVOZ2, MiVOZ3, MiVOZ4) were clustered with apple, cassava and Populus trichocarpa. In Class Ⅴ, MiVOZ1 was clustered with Arabidopsis thaliana, cassava and P.trichocarpa. Under the infection of C. gloeosporioides, only the relative expression of MiVOZ1 and MiVOZ2 genes were significantly higher than the control(P<0.05, the same below); under X. citri pv. mangiferaeindicae infection, only the relative expression of MiVOZ2 gene was significantly higher than that of the control.【Conclusion】 Mango VOZ transcription factors have different biological functions in resisting different pathogens. Among them, the MiVOZ2 gene has similar biological functions in the immune response to resist the infection of C. gloeosporioides and X. citri pv. mangiferaeindicae, and is a positive regulator.

     

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