海南龙血树内生菌Paraphaeosphaeria sporulosa生长条件、全基因组测序分析及促结脂功能验证

Growth conditions, whole genome sequencing analysis and functional validation of resin induction by Paraphaeosphaeria sporulosa from Dracaena cambodiana Pierre ex Gagn.

  • 摘要: 【目的】 分析海南龙血树内生菌Paraphaeosphaeria sporulosa的生长条件及全基因组测序数据,并对该菌株的促结脂功能进行试验验证,为解析海南龙血树与内生真菌的互作机制及开发应用龙血竭内生真菌资源提供参考依据。【方法】 分离菌株Paraphaeosphaeria sporulosa,并在不同生长条件下探究该菌株的生长状况,筛选适宜Paraphaeosphaeria sporulosa菌株生长的温度、pH、光周期、碳源和氮源。对Paraphaeosphaeria sporulosa菌株进行基因组测序与组装,利用GO、KEGG、KOG、CAZY、antiSAMSH等数据库注释基因功能,发掘潜在致病因子。通过对海南龙血树接种Paraphaeosphaeria sporulosa菌株试验验证该菌株对树脂分泌的诱导效果。【结果】Paraphaeosphaeria sporulosa菌株的菌丝表面较为光滑,菌丝体表现为透明、分隔状的丝状结构,分枝较多,呈放射状向外扩展,彼此交错形成网状结构。适宜Paraphaeosphaeria sporulosa菌株的生长条件为温度25 ℃、弱酸(pH 5)、全光照,碳源为淀粉或蔗糖,氮源为硝酸钠或氯化铵。Paraphaeosphaeria sporulosa菌株基因组的长度为39689644 bp。在细胞组分类别中,分别有2041和1163个基因组被注释到膜和核GO功能条目,说明Paraphaeosphaeria sporulosa菌株的细胞膜与细胞核在适应环境中发挥较大作用;71.60%的基因富集在代谢途径中,14.70%的基因富集在遗传信息处理中;在KOG数据库中,注释到的参与信号传导机制的基因数量最多,为214个。共有684个基因在CAZY数据库被成功注释,其中328个基因注释到碳水化合物酯酶家族(GHs),antiSAMSH数据库共有79个基因被注释到6个次生代谢产物类别。筛选出了毒力因子基因G00129750.1,其编码蛋白含有FKBP-C结构域。接种Paraphaeosphaeria sporulosa菌株后,海南龙血树的树脂分泌量较CK明显增加,且树脂分布广,色泽深。【结论】Paraphaeosphaeria sporulosa菌株可与海南龙血树进行互作,通过灰霉病侵染机制促进海南龙血树树脂分泌。

     

    Abstract: 【Objective】 To characterize the growth conditions and whole genome sequencing data of the endophytic fungus Paraphaeosphaeria sporulosa isolated from Dracaena cambodiana Pierre ex Gagn.,and to experimentally validate its resin induction potential, which could provide reference for the interaction mechanisms between Dracaena cambo-diana Pierre ex Gagn. and endophytic fungus,as well as for supporting the development and utilization of endophytic fungus-derived resources for dragon’s blood resin.【Method】 The strain Paraphaeosphaeria sporulosa was isolated and its growth conditions under different growth conditions were investigated. The optimal growth parameters, including temperature, pH, light cycle, carbon sources, and nitrogen sources, were screened. Genome sequencing and assembly were performed for Paraphaeosphaeria sporulosa. Gene functions were annotated using GO,KEGG,KOG,CAZY,and anti-SMASH databases to identify potential pathogenicity-related factors. Through experiments on inoculating the Paraphaeosphaeria sporulosa strain onto Dracaena cambodiana Pierre ex Gagn., the inducing effect of this strain on resin secretion was verified. 【Result】 The hyphae of Paraphaeosphaeria sporulosa exhibited a smooth surface and consisted of transpa-rent,seperated hyphae structure. The hyphae were highly branched,radially expanding and forming an interconnected network-like structure. The optimal growth conditions were 25 ℃,weakly acidic conditions (pH=5),full light exposure,with starch or sucrose as carbon sources,and sodium nitrate or ammonium chloride as nitrogen sources. The genome size of Paraphaeosphaeria sporulosa was 39689644 bp. A total of 2041 and 1163 genomes were annotated to membrane- and nucleus-related GO terms respectively, suggesting that cellular membrane and nuclear functions played important roles in environmental adaptation. KEGG analysis showed that 71.60% of genes were enriched in metabolic pathways,while 14.70% were enriched in genetic information processing. KOG database revealed that genes annotated in signal transduction mechanism represented the largest functional category,with 214 genes. A total of 684 genes were annotated in the CAZY database,of which 328 were annotated in carbohydrate esterase family (GHs). In antiSMASH database, 79 genes annotated in 6 types of secondary metabolite. biosynthetic pathways. The virulence factor gene G00129750.1 was screened, which encoded a protein containing FKBP-C domain. After inoculating Paraphaeosphaeria sporulosa, the resin secretion of Dracaena cambodiana Pierre ex Gagn. was greatly increased compared to CK, and the resin was widely distributed with a deep color. 【Conclusion】 Paraphaeosphaeria sporulosa can interact with Dracaena cambodiana Pierre ex Gagn. and may promote resin secretion via a grey-mold-like infection mechanism.

     

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