欧亚野生葡萄ACX基因家族的鉴定与表达分析

Identification and expression analysis of ACX gene family in wild Eurasian grape (Vitis vinifera ssp. sylvestris

  • 摘要: 【目的】 鉴定欧亚野生葡萄酰基辅酶A氧化酶(VsACX)基因家族成员,并分析其表达模式,为深入解析VsACX基因家族在欧亚葡萄生长调控和逆境适应中的分子机制及培育抗逆葡萄新品种提供参考依据。【方法】 以欧亚野生葡萄VS-1基因组数据为基础,发掘VsACX基因家族成员,借助生物信息学工具对其蛋白理化性质、亚细胞定位、系统发育关系、蛋白二级结构、保守基序和顺式作用元件进行预测分析;对比葡萄不同发育阶段的不同组织及器官的转录组数据,分析VsACX基因家族的表达模式;对2年生欧亚栽培葡萄品种霞多丽进行机械损伤和200 μmol/L茉莉酸甲酯(MeJA)的胁迫处理,采用实时荧光定量PCR分析不同处理时间(0、2、4、6 h)下VsACX家族基因的相对表达量。【结果】在欧亚野生葡萄中鉴定出4个VsACX基因家族成员(VsACX1VsACX2VsACX3VsACX4基因),分别分布于2、7、8和12号染色体上,均定位在过氧化物酶体。VsACX1VsACX2VsACX3基因在黑皮诺葡萄和番茄基因组中均存在一对一共线性关系;不同VsACX基因家族成员间的内含子数量存在差异,为4~13个;Motif 3和Motif 2仅存在于VsACX3和VsACX4蛋白中,VsACX家族蛋白成员均含高度保守的ACOX超家族结构域。VsACX家族蛋白的二级结构主要以α-螺旋为主。系统发育进化分析将VsACX家族蛋白分为3个亚族,在VsACX家族基因启动子区域共鉴定出27个顺式作用元件,分为生长发育调控响应、激素响应和胁迫响应三类。VsACX家族基因表现出组织表达特异性:VsACX2基因在雄蕊和幼苗中的表达量最高,VsACX3VsACX4基因在多数生殖器官中的表达量高于营养器官。在机械损伤处理3 h后,VsACX1VsACX2基因的相对表达量较处理0 h均极显著增加(P<0.01),MeJA处理0~6 h,VsACX1VsACX3VsACX4基因的相对表达量均呈先降低后增加的双相调控模式。【结论】鉴定到4个VsACX基因家族成员,不同成员在进化上高度保守,具备明显的功能分化及组织表达特异性,其表达水平响应机械损伤和MeJA处理。

     

    Abstract: 【Objective】 To identify acyl-CoA oxidase (VsACX) gene family members in Vitis vinifera ssp. sylvestris and analyze their expression patterns, so as to provide theoretical reference for further elucidating the molecular mechanisms by which VsACX gene family regulated growth and stress adaptation in Vitis vinifera ssp. sylvestris, as well as breeding new grape varieties with stress resistance. 【Method】 Based on the genomic data of Vitis vinifera ssp. sylvestris VS-1, members of VsACX gene family were identified. Bioinformatics tools were utilized to predict and analyze the physicochemical properties of proteins, subcellular localization, phylogenetic relationships, protein secondary structures, conserved motifs, and cis-acting elements. Transcriptome data from various tissues and organs of grape at different deve-lopmental stages were compared to characterize the expression patterns of VsACX gene family. Two-year-old cultivated Eurasian grape variety Chardonnay was subjected to mechanical damage and 200 μmol/L methyl jasmonate (MeJA) stress treatments. Real-time fluorescence quantitative PCR was performed to detect the relative expression of VsACX family genes at different treatment times (0, 2, 4, and 6 h). 【Result】 Four VsACX gene family members, namely VsACX1VsACX2, VsACX3, and VsACX4, were identified in Vitis vinifera ssp. sylvestris, which were distributed on chromosomes 2, 7, 8, and 12 respectively, and all predicted to localize on peroxisomes. VsACX1, VsACX2, and VsACX3 genes exhibited one-to-one collinear relationships in the genomes of Pinot Noir grape and tomato. The number of introns varied among different VSACX family members, ranging from 4 to 13. Motif 3 and Motif 2 were exclusively detected in VsACX3 and VsACX4 proteins, and all VsACX famly proteins harbored highly conserved ACOX superfamily domain. The secondary structures of VsACX proteins were predominantly composed of α-helixes. Phylogenetic analysis classified the VsACX family proteins into three subgroups. A total of 27 cis-acting elements falling into three categories (growth- and development-related response, hormone response , and stress response) were identified in the promoter regions of VsACX family genes. VsACX family genes displayed tissue-specific expression patterns: VsACX2 gene showed the highest expression in stamens and seedlings, while VsACX3 and VsACX4 genes were more highly expressed in most reproductive organs than in vegetative organs. Upon 3 h of mechanical damage, the relative expression of VsACX1 and VsACX2 genes increased extremely significantly compared with the 0 h (P<0.01). Under MeJA treatment for 0-6 h, VsACX1VsACX3, and VsACX4 genes presented a biphasic expression pattern characterized by an initial decrease followed by a subsequent increase. 【Conclusion】 Four VsACX gene family members are identified. These members are highly conserved in evolution yet exhibit obvious functional divergence and tissue-specific expression, and their expression levels respond to mechanical damage and MeJA treatments.

     

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