木薯PP2基因家族鉴定及其在非生物胁迫下表达特性分析

Identification and expression characteristic analysis of PP2 gene family in cassava

  • 摘要: 【目的】 鉴定木薯韧皮部蛋白2(PP2)基因家族成员,并进行表达特性分析,为深入探究木薯PP2基因家族在非生物胁迫响应中的作用机制提供理论依据。【方法】 基于木薯全基因组数据,系统鉴定出PP2基因家族成员,分析其染色体定位、基因结构及编码蛋白的理化性质、系统发育、进化特征、保守基序等,并采用实时荧光定量PCR检测MePP2s基因在不同非生物胁迫下的表达模式。【结果】 从木薯基因组中鉴定出18个PP2基因家族成员(MePP2s),按照各基因在染色体上的定位顺序依次命名为MePP2-1~MePP2-18,分布于10条染色体上,编码氨基酸数量为166~346个,蛋白相对分子质量为19252.29~38785.00 Da,理论等电点为5.46~8.83,其中酸性蛋白10个,中性蛋白1个,碱性蛋白7个,分别定位于细胞核、细胞质、叶绿体、细胞骨架。系统发育分析结果显示,18个木薯MePP2s蛋白和30个拟南芥AtPP2s蛋白分为4个类群,MePP2s蛋白主要聚集在Group Ⅰ和Group Ⅲ,而AtPP2s蛋白则主要聚集在Group Ⅰ和Group Ⅱ,显示出物种间进化特征的差异性。同一类群具有相似的基因结构和保守基序。启动子顺式作用元件主要包含光响应元件、激素响应元件、非生物胁迫响应元件等。共线性分析结果显示,共鉴定出3对片段重复基因和4对串联重复基因,这些重复基因主要集中于Group Ⅰ与Group Ⅲ类群中,且进化过程主要受到纯化选择。实时荧光定量PCR结果显示,在盐胁迫、干旱胁迫、低温胁迫、氧化胁迫下,大部分基因的表达随胁迫时间延长呈上升趋势,或呈先升高后降低的变化趋势,但不同基因、不同组织及不同胁迫之间存在明显差异。【结论】 木薯PP2基因家族成员的表达受多种环境信号和植物激素调控,具有明显的组织特异性和胁迫特异性,推测该家族基因在木薯生长发育及胁迫应答中发挥重要作用。

     

    Abstract: 【Objective】 This study aimed to identify the phloem protein 2 (PP2) gene family in cassava and conduct expression characteristic analysis, thereby providing theoretical basis for further investigating the mechanism of PP2 gene family in cassava for the response to abiotic stress. 【Method】 Based on cassava whole-genome data, members of PP2 gene family were systematically identified to analyze their chromosome localization, gene structures, as well as physicochemical properties, phylogeny, and evolution characteristics of their encoded proteins. The real-time fluorescence quantitative PCR was utilized to detect expression patterns of the MePP2s genes under different abiotic stresses. 【Result】 A total of 18 PP2 gene family members (MePP2s) were identified from cassava genomes, and they were named MePP2-1 to MePP2-18 in the order of their chromosomal locations, which were distributed on 10 chromosomes, encoding 166-346 amino acids, with the relative molecular mass of proteins of 19252.29-38785.00 Da, theoretical isoelectric points of 5.46-8.83. Among them, 10 were acidic proteins, 1 was neutral protein, and 7 were basic proteins respectively, and they located in the nucleus, cytoplasm, chloroplast, and cytoskeleton. Phylogenetic analysis results showed that 18 cassava MePP2s proteins and 30 Arabidopsis thaliana AtPP2s proteins were classified into four groups. The MePP2s proteins were mainly clustered in Group Ⅰ and Group Ⅲ,while the AtPP2s proteins were mainly clustered in Group Ⅰ and Group Ⅱ,demonstra-ting the differences in evolutionary characteristics between species. The same group shared similar gene structures and conserved motifs, and the cis-acting elements in gene promoters were mainly associated with light response, hormone response, and abiotic stress response. According to collinearity analysis, three pairs of segmental duplication genes and four pairs of tandem duplication genes were identified, and these duplication genes were mainly concentrated in Group Ⅰ and Group Ⅲ, with their evolutionary processes mainly under purifying selection. The real-time fluorescence quantitative PCR showed that under salt, drought, low-temperature, and oxidative stresses, the expressions of most genes showed an upward trend or an initial increase followed by a decrease trend with the extension of stress time, but there were significant differences among different genes, tissues, and stresses. 【Conclusion】 The expression of PP2 gene family members in cassava is regulated by various environmental signals and plant hormones, showing obvious tissue specificity and stress specificity. It is speculated that the genes of this family play an important role in growth, development, and stress response of cassava.

     

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