基于线粒体Cytb基因的黄纹胡蜂遗传多样性分析

Genetic diversity analysis of Vespa soror based on mitochondrial gene Cytb

  • 摘要: 【目的】开展基于线粒体Cytb基因的黄纹胡蜂遗传多样性分析研究,探究我国黄纹胡蜂种群的遗传多样性与遗传分化现状,为黄纹胡蜂的资源保护与可持续利用提供理论依据。【方法】采集我国7个省(自治区)15个地理种群的黄纹胡蜂样本,提取总DNA并进行PCR扩增。通过测序分析黄纹胡蜂线粒体Cytb基因序列特征,并基于黄纹胡蜂线粒体Cytb基因序列进行单倍型与遗传多样性分析、遗传分化与基因流分析、错配分布与分子方差分析,并构建单倍型网络图与系统发育树。【结果】Cytb基因有效序列长度为393 bp,包含15个变异位点,Cytb基因中AT含量(69.9%)高于GC含量(30.1%),表现出明显的A/T碱基偏好性。15个黄纹胡蜂种群Cytb基因共鉴定出13个单倍型,单倍型H1为优势单倍型,分布于8个种群,出现频率最高,为42.72%。5个种群总体单倍型多样性指数为0.765,核苷酸多样性指数为0.00614,平均核苷酸差异数为2.415。15个种群105个比较组中,74个比较组固定系数(FST)>0.25,占总比较组数的70.48%,80个比较组基因流(Nm)<1.00,占76.19%。群体的错配分布曲线观察值呈明显的多峰分布,遗传变异主要存在于种群间,贡献率为68.75586%。【结论】黄纹胡蜂种群整体具有较高的遗传多样性,单倍型多样性指数和核苷酸多样性指数均处于较高水平。种群间遗传分化明显,多数成对种群间存在高度遗传分化,基因交流水平普遍较低。遗传变异主要来源于种群间。单倍型网络图呈放射状结构,系统发育树形成4个主要支系,存在明显的地理聚类与分化格局。

     

    Abstract: 【Objective】 This study aimed to analyze and investigate the genetic diversity of Vespa soror based on the mitochondrial cytochrome b (Cytb) gene, clarify the current status of genetic diversity and differentiation of Vespa soror populations in China, thereby providing a theoretical basis for conserving and sustainably utilizing Vespa soror resources.【Method】 Vespa soror samples were collected from 15 geographic populations across seven provinces or autonomous regions in China, followed by total genomic DNA extraction and PCR amplification. The gene sequence characteristics of the mitochondrial Cytb gene of Vespa soror were analyzed via sequencing, on the basis of which analyses of haplotype and genetic diversity, genetic differentiation and gene flow, mismatch distribution and molecular variance were performed to establish haplotype network diagrams and phylogenetic trees.【Result】 The length of clean reads of Cytb gene was 393 bp, with 15 variable sites, and the AT content of Cytb gene (69.9%) was higher than GC content (30.1%), showing a marked preference for A/T bases. A total of 13 haplotypes were identified from the 15 Vespa soror populations, and H1 was the dominant haplotype, distributed in 8 populations, showing the highest occurrence frequency of 42.72%. For the five populations, the overall haplotype diversity index was 0.765, the nucleotide diversity index was 0.00614, and the average number of nucleotide differences was 2.415. Among the 105 comparison groups of the 15 populations, the fixed coefficient (FST) index of the 74 comparison groups was above 0.25, taking up 70.48% of the total comparison group; the gene flow (Nm) of the 80 comparison groups<1.00, accounting for 76.19%. The observed values of the mismatch distribution curve of the populations showed a distinct multimodal distribution. Genetic variation mainly existed among populations, with a contribution rate of 68.75586%.【Conclusion】 Vespa soror populations showed high genetic diversity, with high haplotype and nucleotide diversity indexes. Genetic differentiation between populations is obvious, and most pairwise populations show high levels of genetic differentiation and generally low levels of gene flow. Genetic variation is mainly attributed to differences among populations. The haplotype network has a radial structure, and the phylogenetic tree forms four major clades, showing a distinct pattern of geographic cluster and differentiation.

     

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