基于多重分子标记的银耳遗传多样性分析

Genetic diversity analysis of Tremella fuciformis based on multiple molecular markers

  • 摘要: 【目的】通过多重分子标记技术对来自广西、河南、安徽以及国内银耳主产区福建和四川的18株银耳菌株进行鉴定及遗传多样性分析,以期为银耳菌株精准鉴定及杂交育种提供参考依据。【方法】以1对ITS引物、7条ISSR引物、7条RAPD引物和6对SRAP引物对18株银耳菌株进行遗传多样性及聚类分析,并结合菌种来源、表型性状和栽培模式等进行深入分析。【结果】通过4种分子标记分析发现不同菌株间的遗传多样性存在明显差异。ITS聚类分析结果显示,可将18株银耳菌株分为五大类,来自不同地区的野生菌株可单独聚在一起,栽培菌株聚在一起,表明野生银耳种内遗传多样性较高,而栽培种质之间遗传多样性较低。ISSR、RAPD、SRAP分子标记的多态性比率分别为96.47%、100.00%、96.55%,遗传相似系数分别为0.17~0.88、0.15~0.82、0.11~0.96,特异性条带分别为25、17和20条,特异性条带分布于野生菌株TR-1001、TR-1002、TR-22501、TR-22601和TR-22901及四川栽培菌株TR-25和TR-35;ISSR、RAPD、SRAP分子标记均可将银耳菌株按照来源、栽培模式进行聚类,在遗传相似系数分别为0.55、0.48、0.61时,可将明显区分椴木栽培和袋料栽培、野生银耳和栽培银耳;在遗传相似系数分别为0.79、0.79、0.92时,3种分子标记聚类结果中部分银耳菌株按表型性状差异聚类,且RAPD对表型性状的区分具有更高的分辨率。3种分子标记聚类分析结果显示,菌株TR-2307B与菌株TR-HN的遗传相似系数最高,亲缘关系较近,而菌株TR-2307B与TR-35的遗传相似系数最低,亲缘关系最远。【结论】4种分子标记对18株来源、表型性状、栽培模式等不同的银耳种质资源进行了精准鉴定,得到相似的遗传多样性结果,说明基于多重分子标记分析银耳的遗传多样性具有一定的可靠性,ITS、ISSR、RAPD和SRAP均可作为银耳精准鉴定的参考分子标记。综合各分子标记可区分菌种来源、表型性状、栽培模式等方面的差异,RAPD较其他3种分子标记反映出的银耳种质遗传信息更丰富。

     

    Abstract: 【Objective】 This study aimed to identify and analyze the genetic diversity of eighteen strains of Tremella fuciformis collected from Guangxi, Henan, Anhui, and the major domestic production regions of Fujian and Sichuan in China, with the aim of providing a reference for precise identification and hybrid breeding of Tremella fuciformis.【Method】 One pair of ITS primers, seven ISSR primers, seven RAPD primers, and six pairs of SRAP primers were used to conduct genetic diversity and cluster analyses of the 18 Tremella fuciformis strains, and the results were further analyzed according to strain origin, agronomic traits, and cultivation modes.【Result】 The four molecular markers revealed obvious differences in genetic diversity among the strains. ITS cluster analysis divided the 18 strains into five groups, in which wild strains from different regions clustered independently, whereas cultivated strains clustered together, indicating higher intraspecific genetic diversity in wild Tremella fuciformis and relatively lower genetic diversity among cultivated germplasms. The polymorphism rates of ISSR, RAPD, and SRAP molecular markers were 96.47%, 100.00%, and 96.55%, respectively, with their genetic similarity coefficients of 0.17-0.88, 0.15-0.82, and 0.11-0.96, and specific bands of 25, 17, and 20. Most specific bands were detected in wild strains TR-1001, TR-1002, TR-22501, TR-22601, and TR-22901 and cultivated Sichuan strains TR-25 and TR-35. ISSR, RAPD, and SRAP molecular markers were able to distinguish Tremella fuciformis germplasms according to origin and cultivation mode. At genetic similarity coefficients of 0.55, 0.48, and 0.61, respectively, log cultivation and bag cultivation, as well as wild and cultivated Tremella fuciformis, could be clearly distinguished; at similarity coefficients of 0.79, 0.79, and 0.92, respectively, in the cluster result of three molecular markers, some Tremella fuciformis strains clustered based on difference in phenotypic traits, with RAPD showing higher resolutions when distinguishing phenotypic traits. The cluster analysis of three molecular markers showed that strains TR-2307B and TR-HN exhibited the highest genetic similarity and thus shared a close relationship, whereas strains TR-2307B and TR-35 showed the lowest similarity and thus shared a farthest relationship.【Conclusion】 Similar results of genetic diversity are obtained from analysis of 18 Tremella fuciformis germplasm resources from strain origin, phenotypic traits, and cultivation modes using the four molecular markers, indicating that multi-marker analysis is reliable for evaluating genetic diversity of Tremella fuciformis. ITS, ISSR, RAPD, and SRAP can all be used as reference molecular markers for the precise identification of Tremella fuciformis. Considering the differences of molecular markers in distinguishing strain origin, phenotypic traits, and cultivation modes, RAPD could reveal richer genetic information of Tremella fuciformis germplasm than the other three markers.

     

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