利用分子标记快速鉴定马铃薯种质资源中孢囊线虫抗性基因

Rapidly identification of cyst nematode resistance genes in potato germplasm resources using molecular markers

  • 摘要: 【目的】 通过分子标记挖掘马铃薯种质资源中的孢囊线虫抗性基因,以丰富马铃薯孢囊线虫抗性基因资源,为马铃薯抗孢囊线虫育种提供重要抗源。【方法】 以从国际马铃薯中心引进的320份马铃薯种质资源材料为研究对象,分别通过常规PCR对马铃薯内参基因颗粒结合淀粉合成酶1基因(GBSS1)、金线虫抗性基因(H1Gro1-4)及白线虫抗性基因(Gpa2)的紧密连锁分子标记引物GBSS1-3、N146、N195、Gro1-4-1和Gpa2-2的扩增效率和特异性进行验证;开展多重PCR体系优化,通过优化的多重PCR高通量快速检测320份马铃薯种质资源材料中可能含有的3个孢囊线虫抗性基因H1、Gro1-4Gpa2,并通过Venn diagram程序分析320份马铃薯种质资源材料的抗性基因组成。【结果】 建立了5个分子标记快速检测多个马铃薯孢囊线虫抗性基因的多重PCR体系;利用多重PCR构建了同时检测H1、Gro1-4Gpa23个孢囊线虫抗性基因的模式图谱。使用N146和N195标记筛选到38份材料含有H1基因,占比为11.88%;Gro1-4-1标记未检测到Gro1-4基因;Gpa2-2标记筛选到197份材料含有Gpa2基因,占比为61.56%;有108份材料未检测出已知的H1、Gro1-4Gpa2基因,占比为33.75%。抗性基因组成分析发现有23份材料同时含有H1Gpa2基因,占比为7.19%,未鉴定到同时聚合3个抗性基因的材料。【结论】 构建了利用多重PCR同时检测马铃薯孢囊线虫抗性基因H1Gpa2Gro1-4的模式图谱。筛选到23份同时含有H1Gpa2基因的材料,聚合了H1Gpa2基因的双抗马铃薯种质资源可作为抗孢囊线虫育种的候选优良抗源。

     

    Abstract: 【Objective】 This study aimed to identify cyst nematode resistance genes in potato germplasm resources through molecular marker, so as to enrich the gene resources for potato cyst nematode resistance and provide important resistance sources for breeding potato resistant to cyst nematode. 【Method】 320 potato germplasm resources introduced from the International Potato Center were used as materials. The amplification efficiency and specificity of tightly linked molecular marker primers, GBSS1-3, N146, N195, Gro1-4-1, and GPA2-2 for the granule-bound starch synthase 1 as an internal reference gene in potato (GBSS1), Globodera rostochiensis resistance genes (H1 and Gro1-4), and Globodera pallida resistance genes (Gpa2) were validated through conventional PCR. As the multiplex PCR system was optimized, three potential cyst nematode resistance genes, H1Gro1-4, and Gpa2 in 320 potato germplasm resources were screened through high-throughput rapid detection, and the composition of resistance genes of 320 germplasm resources was analyzed by Venn diagram. 【Result】 A multiplex PCR system with five molecular markers was developed to rapidly detect resistance genes of potato cyst nematode. A pattern map was constructed for simultaneous detection of three resistance genes (H1Gro1-4, and Gpa2) against cyst nematodes based on multiplex PCR. The H1 gene was identified in 38 materials using molecular markers N146 and N195 at a ratio of 11.88%. No Gro1-4 gene was detected using the Gro1-4-1 marker. 197 materials containing the Gpa2 gene were identified by the Gpa2-2 marker, with a ratio of 61.56%. H1Gro1-4, and Gpa2 genes were not detected in 108 materials that accounted for 33.75%. The analysis of the composition of resistance genes revealed that 23 resources contained both H1 and Gpa2 resistance genes, with a ratio of 7.19%. No material contai-ning the three resistance genes was identified. 【Conclusion】 A pattern map for the simultaneous detection of potato cyst nematode resistance genes (H1Gro1-4, and Gpa2) by multiplex PCR is established. Twenty-three materials contain both H1 and Gpa2 genes, and these dual-resistant potato germplasm resources combining H1 and Gpa2 genes could be utilized as excellent resistance sources for breeding potato resistant to cyst nematode.

     

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