野蛞蝓响应茶皂素胁迫的转录组分析

Transcriptome analysis of Agriolimax agrestis in response to tea saponin stress

  • 摘要: 【目的】 筛选茶皂素胁迫下的野蛞蝓(Agriolimax agrestis)解毒代谢相关基因,探究野蛞蝓对生物农药的抗性机制,为野蛞蝓的抗药机制及抗药性治理研究提供科学依据。【方法】 以野蛞蝓为研究对象,采用Illumina高通量测序技术对茶皂素和空白对照处理的野蛞蝓进行转录组测序分析,使用生物信息学软件Trinity、DESeq2和GOseq等对差异表达基因(DEGs)进行功能注释、功能分类及代谢通路等分析,并通过实时荧光定量PCR对筛选的抗药性相关基因进行验证。【结果】 从转录组数据中共筛选出1359个DEGs,其中586个显著上调(P<0.05,下同)、773个显著下调。筛选到51个与昆虫抗药性相关的DEGs,涉及谷胱甘肽S-转移酶(GST)、细胞色素P450(CYP450)和羧酸酯酶(CarE)等与代谢相关的抗性基因;GO功能注释结果显示,DEGs主要与氧化还原酶活性、DNA模板的转录、细胞器通路、DNA结合过程相关;共有232个DEGs比对到KEGG中的129条不同代谢通路中,主要涉及抗原加工与提呈、内质网中的蛋白质加工、流体剪切应力与动脉粥样硬化、药物代谢—细胞色素P450等与昆虫抗药性紧密相关的代谢通路。随机选取的抗药性相关基因的实时荧光定量PCR测定结果与转录组测定结果一致,表明转录组测序数据准确可信。【结论】 利用转录组测序技术对茶皂素胁迫下的野蛞蝓进行分析,挖掘获得GST、细胞色素P450和CarE等解毒代谢相关基因,这些基因对野蛞蝓在面临茶皂素胁迫时产生应激反应起到关键作用,是其抗药性的核心因素。

     

    Abstract: 【Objective】 To screen the genes related to detoxification metabolism of Agriolimax agrestis under tea saponin stress,and explore the resistance mechanism of Agriolimax agrostis to biological pesticides,which could provide scien-tific basis for the study of drug resistance mechanism and drug resistance management of Agriolimax agrostis. 【Method】 In this study,Illumina high-throughput sequencing technology was used to sequence the transcriptome(RNA-Seq) of Agriolimax agrestis in tea saponin and blank control treatments. The functional annotation,functional classification and metabolic pathway analysis of differentially expressed genes(DEGs)were performed using bioinformatics softwares such as Trinity,DESeq2 and GOseq,and the screened drug-resistant related genes were verified by real-time fluorescence quantitative PCR. 【Result】 The results showed that 1359 DEGs were screened from the transcriptome data,including 586 significantly up-regulated genes(P<0.05,the same below),773 significantly down-regulated genes. A total of 51 DEGs related to insect drug resistance were screened,involving metabolic resistance genes such as glutathione S-transferase (GST),cytochrome P450 (CYP450) and carboxylesterase (CarE). GO functional annotation analysis showed that DEGs were mainly related to oxidoreductase activity,transcription of DNA templates,organelle pathways and DNA binding. A total of 232 DEGs were mapped to 129 different metabolic pathways in KEGG,mainly involving in antigen processing and presentation,protein processing fluid shear stress in endoplasmic reticulum and atherosclerosis, drug metabolism-cytochrome P450 and other metabolic pathways closely related to insect resistance. The results of real-time fluorescence quantitative PCR of drug resistance related genes were consistent with those of transcriptome,which indicated that the sequencing data of transcriptome was accurate and reliable. 【Conclusion】 The Agriolimax agrestis tea saponin stress are analyzed by transcriptome sequencing technology,and detoxification metabolism-related genes such as GST,cytochrome P450 and CarE are mined. These genes play a key role in the stress response of Agriolimax agrestis when facing the threat of tea saponin and are the core factors of their drug resistance.

     

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