钩吻GeSTR基因克隆及表达模式分析

Cloning and expression pattern analysis of GeSTR gene in Gelsemium elegans Benth

  • 摘要: 【目的】克隆钩吻(Gelsemium elegans Benth)异胡豆苷合成酶基因(GeSTR),并分析其表达模式,为探究该基因在钩吻素己生物合成的调控机制提供理论参考。【方法】经液相色谱—质谱联用仪(LC-MS)测定钩吻不同组织中钩吻素己的相对含量,采用“基因组+表达谱+代谢组”的共表达关联分析方法,筛选得到合成钩吻素己的相关酶基因GeSTR,通过PCR克隆GeSTR基因的编码区序列(CDS),并结合生物信息学软件进行序列分析。利用实时荧光定量PCR检测GeSTR基因在不同组织中的表达模式。【结果】不同组织中钩吻素己相对含量排序:根>花>茎>叶,结合候选14个STR基因的表达谱信息,筛选得到与钩吻素己关联性最强的基因GeSTRGeSTR基因的开放阅读框(ORF)大小为1026 bp,共编码341个氨基酸残基,相对分子量为38.31269 kD,理论等电点(pI)为5.69,脂溶系数和不稳定指数II分别为85.95和30.19,总平均亲/疏水性指数(GRAVY)为-0.158,推测GeSTR蛋白为稳定的亲水蛋白。GeSTR蛋白主要定位于细胞外基质和叶绿体2种亚细胞结构上,其N端含信号肽和跨膜结构域,可能为分泌型蛋白,具有32个潜在的磷酸化位点及1个N-糖基位点。GeSTR蛋白二级结构由无规则卷曲(41.64%)、延伸链(32.85%)、α-螺旋(15.54%)和β-折叠(9.97%)组成,不仅含有STR典型结构域,还含有YvrE结构域,与11个其他植物的STR氨基酸序列具有相似性,与金钩吻(Gelsemium sempervirens)的STR蛋白相似性最高(达93.84%),亲缘关系最近。实时荧光定量PCR结果显示,GeSTR基因仅在钩吻根和花中表达,且在花中的相对表达量极显著高于根部(P<0.01),是根部的4.25倍,说明GeSTR基因在钩吻中的表达具有组织特异性。【结论】钩吻根和花中的钩吻素己相对含量高于茎和叶中,且GeSTR基因仅在根和花中表达,故推测GeSTR基因正向调控钩吻素己合成,具有催化耦合反应产生异胡豆苷的作用及其他潜在的多种功能,为后续研究钩吻素己及其他MIAs合成的途径及机制提供线索。

     

    Abstract: 【Objective】The strictosidine synthase gene of Gelsemium elegans Benth(GeSTR)was cloned and its expression pattern was analyzed to provide theoretical reference for the investigation of the regulation mechanism of this gene in the biosynthesis of gelsenicine.【Method】The relative contents of gelsenicine between the different tissues of Gelsemium elegans Benth were obtained by liquid chromatography-mass spectrometry(LC-MS),and GeSTR,a related enzyme gene for the synthesis of gelsenicine,was filtered by the co-expression correlation analysis method of“genome+expression profile+metabolome”,and coding region sequence(CDS)of the GeSTR gene was cloned by PCR,and sequence analysis in combination with bioinformatics software was conduct. The expression pattern of GeSTR gene among different tissues was obtained by real-time fluorescence quantitative PCR.【Result】The relative content ranking of gelsenicine content in different tissues was as follows:root>flower>stem>leaf,the strongest gene correlated with gelsenicine, GeSTR,was screened by combining the information of the expression profiles of the 14 candidate STR genes. The open reading frame(ORF)of GeSTR gene was 1026 bp in size,encoding a total of 341 amino acids residues,with a theoretical molecular weight of 38.31269 kD,a theoretical isoelectric point(pI)of 5.69. Aliphatic index and instability index II were 85.95 and 30.19 respectively,and the grand average of hydropathicity(GRAVY)was -0.158,which speculated that GeSTR protein was a stable hydrophilic protein. GeSTR protein was mainly located in the 2 subcellular structures,the extracellular matrix and chloroplasts. It contained signal peptide and transmembrane region at N terminal,and might be a secretory protein. The protein also had 32 potential phosphorylation sites and 1 N-glycosylation site. Its secondary structure consisted of random coil(41.64%),extended strand(32.85%),α-helix(15.54%)and β-fold(9.97%). The GeSTR protein not only contained the typical structural domains of STR,but also the YvrE structural domains,which shared similarities with those of STR amino acid sequences of other 11 plants,with the highest similarity(up to 93.84%)and nearest relationship to the STR protein of Gelsemium sempervirens. The results of real-time fluorescence quantitative PCR showed that GeSTR gene was only expressed in roots and flowers of Gelsemium elegans Benth,and its relative expression level in flowers was significantly higher than that in roots(P<0.01),with as 4.25 times as that in roots,indicating that the expression of GeSTR in Gelsemium elegans Benth was tissue-specific.【Conclusion】The relative content of gelsenicine in roots and flowers of Gelsemium elegans Benth is higher than that in stems and leaves,and the GeSTR gene is only expressed in roots and flowers. Therefore,it is hypothesized that GeSTR gene positively regulates the synthesis of gelsenicine and has the role of catalyzing the coupling reaction to produce strictosidine as well as a variety of other potential functions,which will provide clues for the subsequent studies on the pathways and mechanisms for the synthesis of gelsenicine and other MIAs.

     

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