文冠果HD-Zip基因家族成员鉴定及其对盐胁迫的响应

Identification of HD-Zip gene family members in Xanthoceras sorbifolium Bunge and their response to salt stress

  • 摘要: 【目的】 对文冠果同源异型域—亮氨酸拉链(Homedomain-leucine zipper,HD-Zip)基因家族成员进行鉴定,并分析其在盐胁迫条件下的表达情况,为挖掘文冠果耐盐基因及培育文冠果耐盐新品种提供理论依据。【方法】 以文冠果全基因组数据为基础,鉴定获得HD-Zip基因家族成员,通过生物信息学工具对HD-Zip基因家族的理化性质、保守基序、基因结构、顺式作用元件、系统发育进化关系进行预测分析和双酶切法亚细胞定位。对2个月苗龄的文冠果幼苗进行盐胁迫处理(NaCl浓度为50、100、150 mmol/L),以NaCl浓度0 mmol/L为对照组(CK),并采用实时荧光定量PCR对文冠果盐胁迫下根和叶HD-Zip基因家族的组织表达模式进行分析。【结果】 从文冠果全基因组中共鉴定出29个HD-Zip基因家族成员,命名为XsHB1XsHB29,除XsHB29外,XsHB1XsHB28基因均定位到文冠果的12条染色体上。HD-Zip家族成员编码的氨基酸数量为202~838个,分子量为23567.07~92421.90 kD,理论等电点(pI)为4.75~8.98;亚细胞定位结果显示该家族蛋白均定位于细胞核中。系统进化发育分析将29个HD-Zip基因家族成员分为4个亚家族(Ⅰ、Ⅱ、Ⅲ、Ⅳ),各亚家族成员基因和蛋白结构具有相似性。通过启动子顺式作用元件预测发现,HD-Zip基因家族启动子共有22种顺式作用元件,如非生物胁迫和植物激素响应元件。实时荧光定量PCR结果显示,50 mmol/LNaCl处理的叶片中,XsHB1XsHB12XsHB13XsHB29基因的相对表达量均显著升高(P<0.05,下同);而XsHB5XsHB12XsHB13XsHB24XsHB29基因相对表达量在150 mmol/L NaCl处理后的根中均显著下调。亚细胞定位和瞬时转化结果显示,XsHB5是定位于细胞核上的蛋白,能负调控文冠果耐盐性。【结论】 从文冠果基因组中鉴定出29个XsHD-Zip基因家族成员,分为4个亚家族,各亚家族成员基因和蛋白结构具有相似性。其中,XsHB1XsHB5XsHB12XsHB13XsHB24XsHB29等基因在文冠果盐胁迫响应中可能发挥重要作用,文冠果HD-Zip基因家族参与调控文冠果的生长发育、新陈代谢及其他应急反应过程。

     

    Abstract: 【Objective】 The members of homedomain-leucine zipper(HD-Zip) gene family in Xanthoceras sorbifolium Bunge were identified, and their expression under salt stress conditions was analyzed to provide theoretical basis for mining salt tolerant genes in X. sorbifolium and for breeding new salt tolerant varieties. 【Method】Based on the wholegenome data of X. sorbifolium, the members of the HD-Zip gene family were identified. The physicochemical properties, conserved motifs, gene structures, cis-acting elements, and phylogenetic evolutionary relationships of the HD-Zip gene family were predicted and analyzed using bioinformatics tools. Subcellular localization was performed by double enzyme digestion. Two-month-old X. sorbifolium seedlings were subjected to salt stress treatments with NaCl concentrations of 50, 100, and 150 mmol/L, with a control group(CK) treated with 0 mmol/L NaCl. The tissue expression patterns of HDZip family genes under salt stress in roots and leaves of X. sorbifolium were analyzed using real-time fluorescence quantitative PCR. 【Result】 A total of 29 HD-Zip gene family members were identified from the full genome of X. sorbifolium, named XsHB1-XsHB29. Except for XsHB29, XsHB1-XsHB28 genes were all located on the 12 chromosomes of X. sorbifolium. The number of amino acids encoded by HD-Zip family members ranged from 202 to 838, with molecular weights ranging from 23567.07 to 92421.90 kD, and theoretical isoelectric points(pI) ranging from 4.75 to 8.98. Subcellular localization results showed that proteins of the family were located in the nucleus. Phylogenetic analysis divided the 29 HD-Zip gene family members into 4 subfamilies(I, II, III, IV), and the genes and proteins of each subfamily member had similarities in structure. Through the prediction of cis-acting elements in the promoter, it was found that the promoters of HD-Zip genes family had 22 types of cis-acting elements, such as abiotic stress and plant hormone response elements. Real-time fluorescence quantitative PCR results showed that the relative expression levels of XsHB1, XsHB12, XsHB13 and XsHB29 genes in leaves treated with 50 mmol/L NaCl were significantly up-regulated(P<0.05,the same below); while the relative expression levels of XsHB5, XsHB12, XsHB13, XsHB24 and XsHB29 genes were significantly down-regulated after treatment with 150 mmol/L NaCl. Subcellular localization and transient transformation results showed that XsHB5 was a nuclear-localized protein and could negatively regulate the salt tolerance of X. sorbifolium. 【Conclusion】 A total of 29 members of XsHD-Zip gene family can be screened from X. sorbifolium, they are divided into 4 subfamilies, and the members of each subfamily have similar gene and protein structure. Among them, genes such as XsHB1, XsHB5, XsHB12, XsHB13, XsHB24 and XsHB29 may play important roles in the salt stress response of X. sorbifolium. The HD-Zip gene family is involved in regulating the growth, development, metabolism, and other emergency response processes of X. sorbifolia.

     

/

返回文章
返回