白斑狗鱼LADD 2基因克隆及其组织表达特征分析

Cloning and tissue expression characteristics analysis of LADD 2 gene in Esox lucius

  • 摘要: 【目的】 克隆白斑狗鱼(Esox luciusLADD 2基因并分析其组织表达特征,为揭示LADD 2基因在白斑狗鱼性腺发育中的作用提供理论依据。【方法】 利用白斑狗鱼性腺转录组数据,筛选得到126日龄雌性白斑狗鱼高表达基因LADD 2。克隆LADD 2基因编码区(CDS)序列,利用DNAMAN 9.0、NCBI ORF finder、BLAST、ClustalX、ExPASy、ProtParam、PSORT II、SOMPA、SWISS-MODEL等在线软件进行生物信息学分析。基于鱼类梯型凝集素同源物及C型凝集素受体的氨基酸序列,使用MEGA 5.1中的邻接法(Neighbor-joining,NJ)构建系统发育进化树。采用实时荧光定量PCR检测LADD 2基因在126日龄、188日龄和320日龄白斑狗鱼性腺、肠道、肌肉、肝脏、鳃、脑、肾脏及头肾中的相对表达量。【结果】 成功克隆获得白斑狗鱼LADD 2基因CDS序列,全长609 bp,编码85个氨基酸残基,蛋白分子量为9.78 kD,理论等电点(pI)为7.30,分子式为C8635H13504N2334O2404S115,为亲水性蛋白。LDDA 2蛋白中亮氨酸(11.86%)含量最高,色氨酸(2.28%)含量最低。蛋白磷酸化位点预测结果显示,LADD 2蛋白含有147个丝氨酸位点,98个苏氨酸位点,44个酪氨酸位点。蛋白结构预测结果显示,LADD 2蛋白主要由β-转角、α-螺旋和β-折叠构成,存在2个保守的PRT1结构域。氨基酸序列同源比对分析结果显示,白斑狗鱼与阿拉斯加黑鱼(Dallia pectoralisLADD 2蛋白的相似性最高为99%。系统发育进化树显示,白斑狗鱼LADD 2蛋白与鱼类梯型凝集素同源物聚为一支,与大西洋鲑(Salmo salar)、银大麻哈鱼(Oncorhynchus kisutch)及鲱形白鲑(Coregonus clupeaformis)的亲缘关系较近。实时荧光定量PCR结果显示,随着发育时间延长,LADD 2基因在白斑狗鱼卵巢中的相对表达量逐渐降低,与精巢中LADD 2基因相对表达量差异越来越小,且在鳃和脑中也有一定表达。【结论】 LADD 2基因在进化过程中具有一定的保守性和稳定性,其在白斑狗鱼早期卵巢发育过程中发挥重要作用。LADD 2蛋白可能在白斑狗鱼发育后期鳃和脑中具有免疫活性。LADD 2蛋白可能具有免疫功能,进而对白斑狗鱼肝胰腺发育具有保护作用。

     

    Abstract: 【Objective】 To clone LADD 2 gene of Esox lucius and analyze its tissue expression characteristics,which could provide theoretical basis for revealing the role of LADD 2 gene in the gonadal development of E.lucius.【Method】 Using the gonadal transcriptome data of E.lucius,the highly expressed gene LADD 2 in 126-day-old female E.lucius was screened.The coding region (CDS) sequence of LADD 2 gene was cloned,and bioinformatics analysis was performed using online tools such as DNAMAN 9.0,NCBI ORF finder,BLAST,ClustalX,ExPASy,ProtParam,PSORT II,SOMPA and SWISS-MODEL.Based on the amino acid sequences of fish ladder-type lectin homologs and C-type lectin re‐ceptors,a phylogenetic tree was constructed using the neighbor-joining (NJ) method in MEGA 5.1.The relative expres‐sion levels of LADD 2 gene in the gonads,intestines,muscles,liver,gills,brain,kidneys and head kidneys of E.lucius at 126,188,and 320 day-old were detected using real-time fluorescence quantitative PCR. 【Result】 The CDS sequence of LADD 2 gene in E.lucius was successfully cloned,with a total length of 609 bp,encoding 85 amino acids residues.The protein molecular weight was 9.78 kD,the theoretical isoelectric point (pI) was 7.30,and the molecular formula was C8635H13504N2334O2404S115,indicating a hydrophilic protein.The LADD 2 protein had the highest content of leucine(11.86%),and the lowest content of tryptophan (2.28%).Phosphorylation site prediction showed that LADD 2 protein contained 147 serine sites,98 threonine sites and 44 tyrosine sites.Protein structure prediction revealed that LADD 2 pro‐tein mainly consisted of random coils β-turns,α-helices and β-folds,with 2 conserved PRT1 domains.Amino acid se‐quence homology analysis showed that the similarity between the LADD 2 protein of E.lucius and that of Dallia pectora‐lis was the highest at 99%.The phylogenetic tree indicated that LADD 2 protein of E.lucius clustered with fish laddertype lectin homologs and was closely related to Salmo salar,Oncorhynchus kisutch and Coregonus clupeaformis.Realtime fluorescence quantitative PCR results showed that the relative expression of LADD 2 gene in the ovaries of E.lucius gradually decreased with developmental time,and the difference in relative expression between the ovaries and testes be‐came smaller.Additionally,LADD 2 gene was expressed in the gills and brain.【Conclusion】 The function of LADD 2gene exhibits certain conservation and stability during evolution.LADD 2 protein may play an important role in the early ovarian development of E.lucius and may have immune activity in gills and brain during later developmental stages.LADD 2 protein may possess immune functions,thereby protecting the hepatopancreatic development of E.lucius.

     

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