Abstract:
【Objective】 This study aimed to explore the condon preference of oxalyl-CoA synthase(AAE3),oxalylCoA decarboxylase(OCD)and formate dehydrogenase(FDH)genes involved in the oxalate acetylation degradation pathway among 100 plant species,as well as the factors that influenced condon preference,and analyzed their suitable heterologous expression receptors,which could provide scientific basis for understanding the genetic modification and evolution of
AAE3,
OCD and
FDH genes in plants,and for enhancing their heterologous expression efficiency. 【Method】 Comprehensively used CodonW 1.4.2,CUSP and Python softwares,through PR2-plot analysis,ENC-plot analysis,relative synonymous codon usage(RSCU)analysis,neutral plot analysis and codon frequency comparison analysis,the base composition characteristics,codon preference and its main influencing factors,high-frequency codons,optimal codons and heterologous expression adaptation receptors of
AAE3,
OCD,and
FDH coding sequences(CDS)were deeply elucidated. 【Result】 The GC content of the CDS sequences of
AAE3,
OCD and
FDH genes varied greatly at different positions,but they all preferred codon ending with G/C. The gene expression levels of
AAE3,
OCD and
FDH genes were low,and the codon preference was weak,with the degree of
FDH>
AAE3>
OCD. During evolution,the codon preference of AAE3,OCD and FDH genes was mainly influenced by natural selection,with mutation pressure having little effect. RSCU analysis showed that
AAE3,
OCD and
FDH genes had 31,26 and 27 high-frequency codons,and 19,14 and 9 optimal codons respectively,among which the optimal codons of
AAE3 and
FDH genes all ended in G/C,and 8 of the optimal codons of
OCD gene ended in G/C,accounting for 57.14% of the optimal codons.
Arabidopsis thaliana and
Nicotiana tabacum could serve as adaptive receptors for heterologous expression of
AAE3,
OCD and
FDH genes. When
Escherichia coli and
Saccharomyces cerevisiae were selected as heterologous expression receptors,more codons(17-19) needed to be modified. 【Conclusion】
AAE3,
OCD and
FDH genes exhibit highly similar codon preference characteristics during evolutionary process,and the selection of heterologous expression receptors should prioritize
A. thaliana and
N. tabacum.