芋不同组织淀粉生物合成和代谢相关基因的差异表达分析

Differential expression analysis of genes involved in starch biosynthesis and metabolism in different tissues of taro

  • 摘要: 【目的】开展芋(Colocasia esculenta)不同组织的转录组试验,为芋基因功能和代谢调控网络的分子机制研究提供基因资源。【方法】采集播种90 d的荔浦芋1号芋球茎、叶片、叶柄和根进行生理检测和转录组测序,对不同组织的差异表达基因(DEGs)进行GO和KEGG功能富集分析,并对淀粉生物合成和代谢相关基因进行发掘和表达模式分析。【结果】芋球茎的淀粉和可溶性糖含量分别为134.85和23.92 mg/g,在4种组织中含量最高。转录组测序共获得85.41 Gb Clean data,与参考基因组比对效率为90.30%~92.56%,共33828个基因获得功能注释。不同组织间DEGs数量为5625~10562个。球茎与根、叶片和叶柄的比较组中,在生物过程中分别富集到与淀粉生物合成和代谢相关的GO功能2、5和5个;KEGG富集分析显示,在淀粉和蔗糖代谢途径分别富集到146、161和126个DEGs。通过富集分析发掘涉及淀粉生物合成和代谢相关DEGs共82个,其在4种组织中呈不同表达模式,其中ADP-葡萄糖焦磷酸化酶基因(AGPase基因)(Taro_004018和Taro_026553),颗粒结合淀粉合成酶基因(GBSS基因)(Taro_033806),以及淀粉分支酶基因(SBE基因)(Taro_009230)等基因在球茎的表达显著高于其他组织(P<0.05)。【结论】GO和KEGG功能富集分析显示芋4种组织在代谢功能方面有差异,球茎在淀粉含量及淀粉生物合成关键酶基因的表达高于其他组织,是淀粉的储藏器官。

     

    Abstract: 【Objective】Transcriptome experiments were performed on different tissues of taro(Colocasia esculenta) to provide genetic resources for the study of molecular mechanisms of taro gene function and metabolic regulatory networks. 【Method】Taro corms,leaves,petioles and roots of Lipu taro 1 were collected 90 d after sowing for physiological testing and transcriptome sequencing. GO and KEGG functional enrichment analysis was performed for differentially expressed genes(DEGs) in different tissues,and starch biosynthesis and metabolism related genes were identified and their expression patterns were analyzed. 【Result】The starch and soluble sugar contents of taro corms were 134.85 and 23.92mg/g respectively,which were the highest among the four tissues. A total of 85.41 Gb Clean data were obtained for the transcriptome sequencing,with the efficiency of comparison with the reference genome ranging from 90.30% to 92.56%,and a total of 33828 genes were functionally annotated. The number of DEGs between the different tissues ranged from 5625 to 10562. In the comparison groups between corms and roots,leaves,petioles,GO functional enrichment analysis showed enrichment of 2,5 and 5 GO terms related to starch biosynthesis and metabolism in biological processes respectively; KEGG enrichment analysis showed enrichment of 146,161 and 126 DEGs in starch and sucrose metabolism pathways respectively. Enrichment analysis identified 82 DEGs involved in starch biosynthesis and metabolism,which showed different expression patterns in the four tissues,among them,ADP-glucose pyrophosphorylase genes(AGPase gene)(Taro_004018 and Taro_026553),the granule-bound starch synthetase gene(GBSS gene)(Taro_033806),and the starch branching enzyme gene(SBE gene)(Taro_009230) expressed significantly higher in the corm than in the other tissues(P<0.05). 【Conclusion】GO and KEGG functional enrichment analysis reveals differences in metabolic functions among the four taro tissues,with the corm showing higher expression of genes related to starch content as well as key enzymes for starch biosynthesis than the other tissues,and being a storage organ for starch.

     

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