SLC基因超家族分析及其在蛋壳形成不同时期的表达特征

Analysis of chicken SLC gene superfamily and its expression characteristics in different stages of eggshell formation

  • 摘要: 【目的】鉴定出在蛋壳形成过程中可能参与钙转运的溶质载体(SLC)基因超家族成员,并分析SLC基因在蛋壳形成不同时期的表达特征,为进一步探究SLC基因与蛋壳形成的相关性及揭示钙转运调控机制打下基础。【方法】基于NCBI和Ensembl数据库,检索并整理鸡SLC基因超家族全基因信息,通过ProtParam、Pfam、TBtool、NPS@:SOPMA、Euk-mPLoc 2.0及MEGA 11.0等在线软件进行生物信息学分析,并利用实时荧光定量PCR分析钙转运相关SLC基因在蛋壳形成不同时期的表达特征。【结果】鸡SLC基因超家族包括56个亚家族,分布在包括Z染色体在内的32条染色体上,其编码蛋白主要分布在内质网和细胞膜上,大多数为疏水的碱性蛋白,涵盖81种结构域,主要参与核苷酸、糖类、氨基酸、神经递质、无机离子及有机离子等物质的运输,其中与钙离子(Ca2+)相关的SLC亚家族基因有SLC4SLC8SLC9SLC24SLC30SLC8SLC24亚家族基因在进化分支上的亲缘关系很近,存在直接与Ca2+转运的结构域,主要定位在细胞膜和内质网上。实时荧光定量PCR检测结果表明,控制Ca2+SLC8SLC24基因在产蛋鸡子宫部的表达显著高于未产蛋鸡(P<0.05,下同),进一步说明二者确实参与调控Ca2+跨膜运输,但各成员间分工有所不同。【结论】鸡SLC基因超家族编码产物多为疏水的碱性蛋白,含有结合多种物质的结构域,定位于细胞或多种亚细胞结构膜上,表明SLC家族蛋白成员参与多种物质的跨膜转运过程。其中,SLC8SLC24亚家族基因在蛋壳形成过程中协同调控Ca2+从内质网释放并完成跨膜运输,分泌到输卵管子宫部而参与蛋壳的形成。

     

    Abstract: 【Objective】 Identified members of the solute carrier(SLC) gene superfamily that might be involved in calcium transport during eggshell formation,and analyzed the expression characteristics of SLC genes at different stages of eggshell formation to lay the foundation for further investigating the correlation between SLC genes and eggshell formation and reveal the regulatory mechanism of calcium transport.【Method】 Based on the NCBI and Ensembl databases,the entire gene information of the chicken SLC gene superfamily was retrieved and organized,and bioinformatics analysis was performed through online software such as ProtParam,Pfam,TBtool,NPS@:SOPMA,Euk-mPLoc 2.0 and MEGA 11.0;moreover,real-time fluorescence quantitative PCR was used to analyze the expression characteristics of calcium transport-related SLC genes at different stages of eggshell formation.【Result】 The SLC gene superfamily in chickens included 56 subfamilies,which were distributed on 32 chromosomes including the Z chromosome. The encoded proteins were mainly distributed in the endoplasmic reticulum and cell membrane,and most of them were hydrophobic and alkaline proteins. They encompassed 81 structural domains and were mainly involved in the transportation of substances such as nucleotides,sugars,amino acids,neurotransmitters,inorganic ions,and organic ions. Among them,the SLC gene subfamilies related to calcium ions(Ca2+) included SLC4,SLC8,SLC9,SLC24 and SLC30. The SLC8 and SLC24 subfamily genes had a close evolutionary relationship and possessed structural domains directly related to Ca2+ transport. They were mainly located on the cell membrane and endoplasmic reticulum. Real-time fluorescence quantitative PCR detection results showed that the expression of SLC8 and SLC24 genes,which regulated Ca2+,in the uterus of laying hens was significantly higher than that in non-laying hens(P<0.05,the same below),further indicating that both were indeed involved in the regulation of Ca2+ transmembrane transport,but with different functions among members.【Conclusion】 The coding products of the chicken SLC gene superfamily are mostly hydrophobic alkaline proteins,which contain structural domains that bind to various substances. They are localized on the cell or various subcellular membrane structures,indicating that SLC family protein members are involved in the transmembrane transport of various substances. Among them, SLC8 and SLC24 subfamily genes cooperatively regulate the release of Ca2+ from the endoplasmic reticulum during the formation of eggshells and complete the transmembrane transport,secretion to the uterine part of the oviduct,and participate in the formation of the eggshell.

     

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