二斑素瓢虫线粒体基因组全序列测定和分析

Complete sequence determination and analysis of mitochondrial genome of Illeis bistigmosa

  • 摘要: 【目的】在线粒体基因组水平探讨二斑素瓢虫[Illeis bistigmosa(Mulsant,1850)]完整的线粒体基因组结构特征,分析其在瓢虫科(Coccinellidae)内的分类地位,为揭示瓢虫科昆虫的系统发育和进化关系提供理论依据。【方法】通过Illumina二代测序技术对二斑素瓢虫线粒体基因组进行测序,对基因组序列进行拼装和注释,分析其结构特点和碱基组成;使用最大似然法和贝叶斯法构建瓢虫科16个种线粒体基因组的系统发育进化树,分析其在瓢虫科内的系统发育关系。【结果】二斑素瓢虫线粒体基因组序列全长17840 bp,包含13个蛋白质编码基因,22个tRNA基因,2个rRNA基因和1个A+T富含区(A+T rich region)。基因组全序列的AT含量为78.44%,表现明显的A+T偏向性。13个蛋白质编码基因中除cox1基因以TTG为起始密码子外,其余12个基因均以ATN为起始密码子;nad4、nad5、cox2cox3基因的终止密码子以单独的T结尾。除trnS1trnP基因外,其余20个tRNAs的二级结构均为典型的三叶草结构,二级结构中有U-U或U-G碱基错配现象。系统发育分析显示,瓢虫亚科的所有物种聚在同一分支,支持该亚科的单系性;二斑素瓢虫与素菌瓢虫属(Illeis)另外2个种[柯氏素菌瓢虫(I.koebelei)和素鞘瓢虫(I.cincta)]聚为一个分支,组成姐妹关系。【结论】获得了二斑素瓢虫的线粒体基因组全序列,二斑素瓢虫线粒体基因组符合瓢虫科昆虫线粒体基因组的一般特征;二斑素瓢虫与柯氏素菌瓢虫和素鞘瓢虫的亲缘关系较近,与传统的形态学分类相一致。

     

    Abstract: 【Objective】 The purpose of the study was to characterize the complete mitochondrial genome structure of Illeis bistigmosa(Mulsant, 1850) at the level of the mitochondrial genome, to analyze its classification status within Coccinellidae, and to provide a theoretical basis for revealing the phylogenetic and evolutionary relationships of Coccinellidae insects.【Method】 The mitochondrial genome of I. bistigmosa was sequenced by using Illumina Next-generation sequencing technique, and the genome sequence was assembled and annotated to analyze its structural features and base composition. The phylogenetic trees of mitochondrial genomes of 16 Coccinellidae species were constructed by using maximum likelihood and Bayesian methods to analyze their phylogenetic relationships within Coccinellidae.【Result】 The mitochondrial genome sequence of I. bistigmosa was 17840 bp in length, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 A+T rich region. The AT content in the whole genome sequence was 78.44%, showing significant A+ T bias. Among the 13 protein-coding genes, 12 genes used ATN as the start codon, except for the cox1 gene, which had TTG as the start gene. The termination codon of nad4, nad5, cox2, and cox3 genes ended in a separate T. Except for trnS1 and trnP genes, all the remaining 20 tRNAs had the typical clover-leaf-like structure with U-U or U-G base mismatched in the secondary structure. Pgylogenetic analysis showed that all species of Coccinellinae clustered in the same branch, confirming Coccinellinae to be a monophyly. I. bistigmosa grouped with two other species of Illeis(I. koebelei and I. cincta) in a branch, forming a sister relationship.【Conclusion】 In this study, the mitochondrial genome complete sequence of I. bistigmosa is obtained. The mitochondrial genome of I. bistigmosa conforms to the general characteristics of Coccinellidae mitochondrial genome. I. bistigmosa is closely related to I. koebelei and I. cincta, which is in accordance with the traditional morphological classification.

     

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