非复制型尿嘧啶营养缺陷型弓形虫刺激雏鸡脾脏的转录组学分析

Transcriptome analysis of chick spleens stimulated by nonreplicating Toxoplasma uracil auxotrophs

  • 摘要: 【目的】探究非复制型尿嘧啶营养缺陷型弓形虫(NRTUAs)感染雏鸡脾脏的转录组学变化,明确NRTUAs对雏鸡脾脏先天性免疫的调节效果,为研发家禽抗弓形虫疫苗提供理论依据。【方法】分别以NRTUAs和磷酸盐缓冲液(PBS)感染14日龄雏鸡,感染后第3 d采集脾脏组织样品进行转录组测序,筛选出NRTUAs组与PBS组间的差异表达基因(DEGs),然后进行GO功能注释、KEGG信号通路富集及蛋白调控网络分析,并通过实时荧光定量PCR验证转录组测序的准确性。【结果】与PBS组相比,从感染NRTUAs的雏鸡脾脏中筛选出499个DEGs (286个为上调DEGs,213个为下调DEGs),且NRTUAs组中上调表达的DEGs多于下调表达的DEGs。GO功能注释分析发现,DEGs注释在生物过程(Biological process,BP)、细胞组分(Cellular component,CC)和分子功能(Molecular function,MF)三大类别的58个功能条目上,主要涉及端粒蛋白定位建立正调控、蛋白稳定、含伴侣蛋白T-复合物、内质网腔、内质网、内质网膜组成部分、纺锤中央区及未折叠蛋白结合等功能条目; KEGG信号通路富集分析显示,DEGs主要富集在内质网蛋白加工通路、RNA转运、细胞周期、钙信号通路、黏着斑、细胞衰老、神经活性配体—受体相互作用、细胞因子—细胞因子受体相互作用通路及氨基酸生物合成等通路中;蛋白互作网络分析结果表明,DEGs编码蛋白PLK1、CCNB1、CDK1、CDC20、CCNA2和NDC1均在细胞周期通路上调表达。实时荧光定量PCR验证结果显示,只有2个DEGs(CXCL12VPREB3)呈上调表达,其余8个DEGs呈下调表达,与转录组测序结果基本一致。【结论】感染NRTUAs后雏鸡脾脏免疫相关基因表达上调,且多数DEGs富集在内质网蛋白合成与细胞周期等相关信号通路上,脾脏细胞活动明显增强,即通过加快建立细胞连接及启动先天性免疫反应而积极对抗弓形虫入侵。

     

    Abstract: 【Objective】The purpose of the study was to explore the transcriptomic changes of chick spleens infected by nonreplicating Toxoplasma uracil auxotrophs(NRTUAs),to clarify the regulatory effect of NRTUAs on the innate immunity in chick spleens,so as to provide theoretical basis for the development of anti-Toxoplasma gondii vaccine in poultry.【Method】 14-day-old chickens were infected with NRTUAs and phosphate buffer saline(PBS)respectively. 3 d after infection,spleen tissue samples were collected for transcriptome sequencing,and differentially expressed genes(DEGs) between NRTUAs and PBS groups were screened. Then GO functional annotation,KEGG signaling pathway enrichment and protein regulatory network analysis were performed. The accuracy of transcriptome sequencing was verified by realtime fluorescence quantitative PCR.【Result】Compared with PBS group,there were 499 DEGs(286 were up-regulated DEGs and 213 were down-regulated DEGs)screened from the chick spleens infected with NRTUAs,and the NRTUAs group had more up-regulated DEGs than down-regulated DEGs. GO functional annotation analysis found that DEGs was annotated on 58 functional items in three major categories of biological process(BP),cellular component(CC)and molecular function(MF). They mainly involved functional entries of positive regulation of establishment of protein localization to telomere,protein stabilization,chaperonin-containing T-complex,endoplasmic reticulum lumen,endoplasmic reticulum, integral component of endoplasmic reticulum membrane, spindle midzone and unfolded protein binding. KEGG signaling pathway enrichment analysis showed that DEGs were mainly enriched in endoplasmic reticulum protein processing pathway in endoplasmic reticulum,RNA transport,cell cycle,calcium signaling pathway,focal adhesion,cellular senescence,neuroactive ligand-receptor interaction,cytokine-cytokine receptor interaction pathway and amino acid biosynthesis pathways. The results of protein interaction network analysis showed that the expression of DEGs coding proteins PLK1,CCNB1,CDK1,CDC20,CCNA2 and NDC1 were up-regulated in the cell cycle pathway. Real-time fluorescence quantitative PCR verification results showed that 2 DEGs(CXCL12 and VPREB3)were up-regulated,and the other 8 DEGs were down-regulated,which basically conformed with the transcriptome sequencing results.【Conclusion】 The expression of immune-related genes is up-regulated in chick spleens infected with NRTUAs,and most of DEGs are enriched in the related signaling pathways of endoplasmic reticulum protein synthesis and cell cycle. The activity of spleen cells is greatly enhanced,which is to accelerate the establishment of cell connections and initiate the innate immune response to actively fight against the invasion of T. gondii.

     

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