茶树Whirly基因家族的鉴定与表达分析

Identification and expression analysis of Whirly gene families in Camellia sinensis (L.) O. Kuntze

  • 摘要: 【目的】对茶树Whirly基因家族成员进行鉴定及表达分析,为进一步探究Whirly基因家族在茶树生长发育和逆境响应的作用机理提供参考。【方法】以茶树品种北茶36、龙井43和大面白的叶片为材料,基于Whirly基因家族的保守结构特征,从茶树基因组鉴定CsWhys基因家族成员,利用生物信息学软件对其进行可视化分析,并对组织特异性和时空表达模式分析。【结果】从舒茶早茶树基因组中鉴定获得2个CsWhy基因,命名为CsWhy1(XP_028085682.1)和CsWhy2(XP_028102803.1)。系统进化树分析结果显示CsWhy1和CsWhy2蛋白分别与已知的定位于叶绿体和线粒体的Whirly蛋白聚为一类。CsWhys基因启动子区域富含激素、胁迫和MYB转录因子结合位点等顺式作用元件,种类呈多样性。组织表达特性分析显示,CsWhy1在茶树叶片和芽中具有较高的表达丰度;CsWhy2则在茶树不同组织中均具有较高的表达丰度。时空表达模式分析结果发现,CsWhys的表达在不同时间点受低温、干旱、ABA、GA和H2O2处理诱导上调。冷驯化条件下,CsWhy1在抗寒品种龙井43和不抗寒品种大面白中呈现相反的表达模式,而CsWhy2在2个品种中均下调表达。【结论】茶树基因组中2个CsWhys基因具有Whirly基因家族的典型特征,茶树CsWhys基因的表达具有明显的组织特异性,推测CsWhys基因家族在茶树芽叶生长和抗逆过程中起发挥了重要调控作用。

     

    Abstract: 【Objective】To conduct identification and expression analysis of Whirly gene family members in tea trees,so as to provide reference for further exploration of mechanism of Whirly gene family in tea tree growth and stress response.【Method】Leaves of tea plant cultivars Beicha 36,Longjing 43,and Damianbai were taken as materials. Based on conserved structural characteristics of Whirly gene family,CsWhys gene family members were identified from tea genome.The Whirly gene family was visually analyzed by bioinformatics software,and its tissue specificity and spatio-temporal expression pattern were analyzed.【Result】Two CsWhys genes were identified from Shuchazao tea tree,and they were named CsWhy1(xp_028085682.1)and CsWhy2(xp_028102803.1),respectively. Phylogenetic tree analysis showed that CsWhy1and CsWhy2 proteins clustered with the known Whirly proteins located in chloroplasts and mitochondria,respectively.The promoter regions of CsWhys had abundant cis-acting elements such as hormone,stress and MYB transcription factor binding site,and its species were diverse. Tissue specific expression of tea trees showed that CsWhy1 had high expression in leaves and buds,but low expression in stems and roots;CsWhy2 had high expression in different tissues of tea trees.Spatio-temporal expression pattern analysis showed that expression of CsWhys was up-regulated by low temperature,drought,ABA,GA and H2O2 at different time points under various abiotic stress treatments. Under cold acclimation,expression pattern of Cswhy1 was opposite in cold-resistant variety Longjing 43 and non-cold-resistant variety Damianbai,while the expression of CsWhy2 was down-regulated in the 2 varieties.【Conclusion】Two CsWhys genes in tea plant genome have typical characteristics of the Whirly family,and the expression of CsWhys have obvious tissue specificity.Therefore,it is speculated that CsWhys gene family plays an important regulatory role in the growth and stress resistance of tea tree buds and leaves.

     

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