华东葡萄遗传连锁图谱构建及灰霉病抗性QTL定位

Vitis pseudoreticulata genetic map construction and QTL mapping to its gray mold resistance

  • 摘要: 【目的】构建华东葡萄遗传连锁图谱,并定位其抗灰霉病QTL,为华东葡萄种质资源的高效利用及其抗灰霉病基因发掘提供理论基础。【方法】以高感灰霉病的欧洲葡萄赤霞珠为母本、抗灰霉病的华东葡萄1058-2为父本,以二者杂交F1代128株单株为群体材料,利用GBS(Genotyping-by-sequencing)简化基因组测序技术开发SNP分子标记,应用JoinMap 4.0构建遗传连锁图谱,使用MapQTL 6.0对F1代抗灰霉病表型进行抗灰霉病QTL定位。与葡萄参考基因组PN40024进行比对分析,筛选QTL区间的抗病候选基因。【结果】2019和2020年杂交F1代群体的灰霉病抗性多为中抗及以上。在亲本之间共鉴定到6357个SNP分子标记。挑选出在染色体上均匀分布的654个SNP分子标记用于构建华东葡萄遗传连锁图谱。该图谱包含19个连锁群,总长度为1843.67 cM,SNP分子标记间平均遗传距离为2.82 c M。根据2019和2020年的F1群体灰霉病表型数据,连续两年在LG9连锁群上定位到1个与灰霉病抗性连锁的QTL,命名为Rbc1。该QTL与SNP分子标记np6008紧密连锁,在2019和2020年表型中可解释的变异率分别为13.1%和12.6%。参考葡萄基因组PN40024的物理图谱和基因注释信息,Rbc1位于9号染色体物理距离5969~12345 kb内,在这个QTL区间含有45个与抗病性相关的基因,编码含有LRR结构域的受体激酶和推测的抗病蛋白。【结论】葡萄灰霉病抗性是多基因控制的数量性状,抗性亲本华东葡萄1058-2中存在抗病的主效QTL。筛选出的45个与抗病性相关的基因可能参与调控葡萄灰霉病抗性,后续可作为候选基因进一步解析华东葡萄1058-2灰霉病抗性功能。

     

    Abstract: 【Objective】Genetic linkage map was constructed and QTL resistant to gray mold was localized,so as to provide a theoretical foundation of efficient utilization of Vitis pseudoreticulata germplasm resources and exploration for gray mold resistance genes.【Method】European grape Cabernet Sauvignon with high susceptibility to grape gray mold was taken as female parent,and V. pseudoreticulata 1058-2 with high resistance to gray mold was taken as male parent.128 strains of F1generation obtained through hybrid were taken as population material. GBS(Genotyping-by-sequencing)simplified genome sequencing technology was used to develop SNP markers. JoinMap 4.0 was used to construct a genetic linkage map. MapQTL 6.0 was used to locate QTL resistant to gray mold based on the phenotypes of F1generation. Disease-resistant candidate genes in QTL interval were screen out and analyzed according to the grape reference genome PN40024.【Result】Hybrid F1generation population in 2019 and 2020 were of medium and stronger resistance. 6357 SNP markers were identified between the parents,and 654 SNP markers evenly distributed on chromosomes were selected to construct a genetic linkage map of V. pseudoreticulata. The genetic linkage map consisted of 19 linkage groups,with a length of 1843.67 cM and the average genetic distance between markers was 2.82 cM. A QTL named Rbc1 linked to gray mold resistance was located on LG9 linkage group for two consecutive years according to gray mold phenotype data of F1population of 2019 and 2020. This QTL was closely linked with SNP markers np6008,which explained 13.1% and 12.6%phenotypic variation in 2019 and 2020,respectively. Referring to the physical map and gene annotation information of grape genome PN40024,Rbc1 was located in the physical distance 5969-12345 kb on chromosome. This QTL interval contained 45 genes associated with disease resistance,which encoded receptor kinases containing LRR domains and predicted disease-resistant proteins.【Conclusion】Grape gray mold resistance is a quantitative trait controlled by multiple genes and main QTL exists in resistance parent V. pseudoreticulata 1058-2. The screened 45 genes related to disease resistance may be involved in the regulation of grape gray mold resistance,and can be used as candidate genes for further analyze about grape gray mold resistance mechanism in V. pseudoreticulata 1058-2.

     

/

返回文章
返回