玉米ZmEXO70s基因家族鉴定及苗期耐热性关联分析

Identification of ZmEXO70s gene family in maize and its correlation with heat tolerance at seedling stage

  • 摘要: 【目的】鉴定玉米EXO70sZmEXO70s)基因家族成员,分析其遗传变异与玉米耐热性的关联性,为揭示其在玉米耐热方面的功能和分子机制打下基础。【方法】以拟南芥EXO70sAtEXO70s)基因家族成员序列为参考,利用MaizeGDB和NCBI数据库从玉米全基因组中鉴定出ZmEXO70s基因家族成员,对其进行基因结构及系统进化分析,根据其在系统发育进化树上的位置对其进行系统命名,并基于转录组测序(RNA-Seq)数据分析ZmEXO70s基因家族成员在不同组织及非生物胁迫下的表达模式。最后,鉴定玉米自交群体AM368中ZmEXO70s基因SNP位点,结合玉米AM368群体苗期耐热存活率进行基因家族关联分析。【结果】从玉米全基因组序列中共鉴定出36个ZmEXO70s基因,分布在10条染色体上,长度为228~3726 bp,编码75~1241个氨基酸残基,蛋白分子量为8.6~136.6 kD,理论等电点(pI)介于4.5~9.9,大部分蛋白pI小于7.0。拟南芥、水稻和玉米的EXO70s蛋白被分为9组(A组~I组),其中ZmEXO70s蛋白在各组中均有分布。大多数ZmEXO70s基因不含内含子,只有少数基因含有内含子,且内含子数量不同。36个ZmEXO70s蛋白共含8种基序(Motif 1~Motif 8),主要集中在C端,说明这些蛋白端序列较保守,且Motif 1~Motif 8组成Exo70保守结构域。ZmEXO70s基因在不同组织中的表达水平均存在明显差异,其中ZmEXO70B3基因在雄穗、花药、叶片和花丝中高表达,ZmEXO70C1a基因只在雄穗和花药中高表达,ZmEXO70D2b基因在胚乳和萌发种子中低表达,ZmEXO70G1c基因在花丝和萌发种子中低表达。有23个ZmEXO70s基因至少可响应一种非生物胁迫,说明这些ZmEXO70s基因参与非生物胁迫响应过程。ZmEXO70D2aZmEXO70E1基因的遗传变异与玉米苗期耐热性具有显著相关性(P≤0.01)。【结论】ZmEXO70s基因家族成员在系统发育进化上较保守,其基因组复制事件可能发生在禾本科植物分化后,且大多数ZmEXO70s基因被保留,仅部分基因被丢失。ZmEXO70s基因可能在非生物胁迫响应过程中发挥重要作用,ZmEXO70D2aZmEXO70E1基因可作为调控玉米苗期耐热性重要候选基因。

     

    Abstract: 【Objective】To identify the members of maize ZXO70s(ZmEXO70s) gene family and analyze the correlation between their genetic variation and maize heat tolerance, and lay the foundation for defining its functional and molecular mechanisms in maize heat tolerance.【Method】With the sequences of Arabidopsis thaliana EXO70s(AtEXO70s) gene family members as reference, the members of the ZmEXO70s gene family were identified from the whole maize genome by MaizeGDB and NCBI databases, and the gene structure and phylogenetic analysis were carried out, and the members were systematically named according to their positions in the phylogenetic tree. Based on transcriptome sequencing(RNA-Seq) data, the expression patterns of ZmEXO70s gene family members under different tissues and abiotic stresses were analyzed. Finally, the SNP loci of ZmEXO70s gene in maize self-crossing population AM368 were identified, and gene family association analysis was conducted in combination with the heat resistance survival rate of maize AM368 at seedling stage.【Result】A total of 36 ZmEXO70s genes were identified from the whole genome sequence of maize, distributed on 10 chromosomes, with lengths ranging from 228 to 3726 bp, encoding 75-1241 amino acids, molecular weight of proteins ranging from 8.6 to 136.6 kD, theoretical isoelectric point(pI) ranging from 4.5 to 9.9, and pI of most proteins was less than 7.0. The EXO70s proteins of A. thaliana, rice and maize were divided into 9 groups(groups A to I), with ZmEXO70s proteins distributed in each group. Most ZmEXO70s genes did not contain introns, and only a few did, with varying numbers of introns. The 36 ZmEXO70s proteins contained 8 motifs(Motif 1-Motif 8), which were mainly concentrated in the C terminal, indicating that the ZmEXO70s C terminal sequence was relatively conservative, and Motif 1-Motif 8 constituted the conservative domain of Exo70. The expression level of the ZmEXO70s gene varied greatly in different tissues. The ZmEXO70s gene was highly expressed in panicle and anther, leaf and filaments, ZmEXO70C1a gene was only highly expressed in panicle and anther, and ZmEXO70D2b gene was lowly expressed in endosperm and germinal seed. ZmEXO70G1c gene was lowly expressed in filaments and germinated seeds. Twenty-three ZmEXO70s genes could respond to at least one abiotic stress, suggesting that these ZmEXO70s genes were involved in the abiotic stress response process. The genetic variation of ZmEXO70D2a and ZmEXO70E1 was significantly correlated with maize seedling heat resistance(P≤0.01). 【Conclusion】The members of the ZmEXO70s gene family are relatively conserved in phylogenetic evolution, and the genome replication event may occur after the differentiation of Gramineae, and most of the ZmEXO70s genes are retained, while some of them are lost. ZmEXO70s may play an important role in abiotic stress response, ZmEXO70D2a and ZmEXO70E1 genes may be important candidate genes for the regulation of maize seedling heat tolerance.

     

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